STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3546PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: msi:Msm_1326 polysaccharide/polyol phosphate ABC transporter, ATPase component. (247 aa)    
Predicted Functional Partners:
Cphy_3547
PFAM: ABC-2 type transporter; KEGG: mst:Msp_0204 predicted ABC-type polysaccharide/polyol phosphate export system, permease protein.
 
 
 0.999
Cphy_3544
PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: cpe:CPE0482 probable glycero-phosphotransferase.
 
 
 0.834
Cphy_2336
PFAM: glycosyl transferase group 1; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: ecc:c3694 hypothetical protein.
 
 
 0.814
Cphy_3545
Glycosyltransferase; KEGG: lca:LSEI_1134 glycosyltransferase.
  
 
 0.773
Cphy_0297
PFAM: glycosyl transferase family 2; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: bld:BLi03816 hypothetical protein.
 
 
 0.762
Cphy_0248
KEGG: tte:TTE0490 predicted amidophosphoribosyltransferases.
   
    0.643
Cphy_3542
KEGG: dsy:DSY3322 hypothetical protein; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
 
   
 0.621
Cphy_3503
PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: drm:Dred_3032 NAD-dependent epimerase/dehydratase.
  
  
 0.580
Cphy_2814
PFAM: glycosyl transferase family 2; Methyltransferase type 11; Methyltransferase type 12; KEGG: cbe:Cbei_2586 glycosyl transferase, family 2.
  
  
 0.546
Cphy_0301
PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: lmf:LMOf2365_1103 teichoic acid biosynthesis domain protein.
 
 
 0.544
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.