STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3567KEGG: sco:SCO0628 secreted protein. (514 aa)    
Predicted Functional Partners:
Cphy_3572
KEGG: bth:BT_3593 hypothetical protein.
 
     0.807
Cphy_1315
PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: cbe:Cbei_0310 electron transfer flavoprotein, alpha/beta-subunit-like protein.
  
 
 0.788
Cphy_0388
PFAM: oxidoreductase domain protein; KEGG: bth:BT_3586 putative dehydrogenase.
  
     0.739
Cphy_3563
KEGG: bth:BT_0449 conserved hypothetical protein, putative S-layer related protein precursor.
 
     0.715
Cphy_3566
KEGG: tte:TTE2409 hypothetical protein.
 
     0.678
Cphy_0650
PFAM: lipolytic protein G-D-S-L family; KEGG: csc:Csac_0779 lipolytic enzyme, G-D-S-L family.
  
     0.654
Cphy_3568
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0557 sugar ABC transporter permease.
 
     0.634
Cphy_1316
PFAM: Electron transfer flavoprotein alpha/beta-subunit; Electron transfer flavoprotein alpha subunit; KEGG: cbe:Cbei_0311 electron transfer flavoprotein, alpha subunit-like protein.
  
 
 0.620
Cphy_0711
PFAM: glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: tde:TDE1730 glycosyl hydrolase, family 2; Belongs to the glycosyl hydrolase 2 family.
  
     0.617
Cphy_1063
Conserved hypothetical protein; KEGG: bth:BT_0447 S-layer related protein precursor, sialic acid-specific 9-O-acetylesterase.
 
     0.610
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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