STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3579Hypothetical protein; KEGG: abu:Abu_1032 peptidase, M50 family. (350 aa)    
Predicted Functional Partners:
Cphy_2079
PFAM: protein of unknown function DUF214; KEGG: cth:Cthe_0540 protein of unknown function DUF214.
  
 
 0.851
Cphy_3578
PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: bay:RBAM_037310 hypothetical protein.
       0.781
Cphy_3577
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lmf:LMOf2365_2171 ABC transporter, ATP-binding protein.
       0.706
Cphy_3576
Hypothetical protein; KEGG: lin:lin2245 similar to ABC transporter (membrane protein).
     
 0.691
Cphy_3331
PFAM: protein of unknown function DUF214; KEGG: csc:Csac_0506 protein of unknown function DUF214.
  
 
 0.676
Cphy_3558
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cno:NT01CX_1854 pyruvate:ferredoxin (flavodoxin) oxidoreductase.
   
 
 0.633
Cphy_0192
PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: ppe:PEPE_1650 ABC-type antimicrobial peptide transport system, ATPase component.
  
 
 0.559
Cphy_1857
PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: blo:BL1369 large protein with N-terminal similarity to ATP binding protein of ABC transporter.
  
 
 0.559
Cphy_3574
PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mba:Mbar_A3165 Fe-S oxidoreductase.
       0.423
Cphy_3575
Hypothetical protein.
       0.423
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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