STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3580PFAM: protein of unknown function DUF181; KEGG: abu:Abu_1484 conserved hypothetical protein. (618 aa)    
Predicted Functional Partners:
Cphy_0252
PFAM: Abortive infection protein; KEGG: amt:Amet_1623 abortive infection protein.
  
  
 0.646
Cphy_0673
PFAM: Abortive infection protein; KEGG: cef:CE0449 hypothetical protein.
  
  
 0.646
Cphy_2236
PFAM: Abortive infection protein; KEGG: dsy:DSY1578 hypothetical protein.
  
  
 0.646
Cphy_0968
PFAM: nitroreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cbe:Cbei_4919 nitroreductase.
  
  
 0.528
Cphy_1294
PFAM: nitroreductase; KEGG: cac:CAC1551 nitroreductase family protein.
  
  
 0.512
Cphy_1360
KEGG: dsy:DSY1049 hypothetical protein.
  
  
 0.512
Cphy_1974
PFAM: nitroreductase; KEGG: cbe:Cbei_3418 nitroreductase.
  
  
 0.512
Cphy_2166
PFAM: nitroreductase; KEGG: ckl:CKL_0342 predicted oxidoreductase.
  
  
 0.512
Cphy_2630
KEGG: sat:SYN_02020 nitroreductase family protein.
  
  
 0.512
Cphy_3226
PFAM: nitroreductase; KEGG: mma:MM_1584 NADPH-flavin oxidoreductase.
  
  
 0.512
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.