STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3584PFAM: NADPH-dependent FMN reductase; KEGG: mbn:Mboo_0948 NADPH-dependent FMN reductase. (212 aa)    
Predicted Functional Partners:
Cphy_0968
PFAM: nitroreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cbe:Cbei_4919 nitroreductase.
 
  
 0.524
Cphy_3583
TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: ctc:CTC02458 cobalt-zinc-cadmium resistance protein CzcD; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
       0.495
Cphy_3585
Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: oih:OB2557 transcriptional regulator.
       0.406
Cphy_2166
PFAM: nitroreductase; KEGG: ckl:CKL_0342 predicted oxidoreductase.
 
  
 0.402
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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