STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3589PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH2725 lactose transport system permease protein. (294 aa)    
Predicted Functional Partners:
Cphy_3588
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH2724 lactose transport system permease protein.
  0.992
Cphy_3590
PFAM: extracellular solute-binding protein family 1; KEGG: eca:ECA0848 putative sugar ABC transporter, periplasmic binding protein.
 
  0.977
Cphy_2306
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: btl:BALH_3631 maltosaccharide ABC transporter, permease.
 
 0.869
Cphy_3611
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: cth:Cthe_1862 ABC transporter related protein.
 
 
 0.847
Cphy_3031
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0318 sugar ABC transporter permease.
 
   0.846
Cphy_0528
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL120663 putative permease component of ABC transporter.
 
   0.845
Cphy_1015
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcz:BCZK1636 sugar ABC transporter, permease.
   0.845
Cphy_1391
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00317 probable sugar ABC transporter, permease protein.
 
   0.845
Cphy_0594
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC1215 sugar ABC transporter permease.
 
   0.843
Cphy_0289
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL120663 putative permease component of ABC transporter.
 
   0.840
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.