STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3595KEGG: cpf:CPF_1765 hypothetical protein. (314 aa)    
Predicted Functional Partners:
Cphy_2202
PFAM: phosphopantetheine-binding; KEGG: ckl:CKL_1730 polyketide synthase-related protein.
  
 
 0.900
Cphy_1699
Phosphopantetheine-binding; PFAM: condensation domain protein; phosphopantetheine-binding; KEGG: bbt:BBta_1089 putative non-ribosomal peptide synthase.
  
  
 0.589
Cphy_0231
PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: cno:NT01CX_1336 alginate O-acetylation protein; Belongs to the membrane-bound acyltransferase family.
 
     0.515
Cphy_3431
PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: cdf:CD2543 putative polysaccharide O-acetylase; Belongs to the membrane-bound acyltransferase family.
 
     0.471
Cphy_3432
KEGG: cdf:CD2542 hypothetical protein.
  
     0.461
Cphy_3828
PFAM: lipolytic protein G-D-S-L family; KEGG: ctc:CTC01503 phospholipase-subfamily protein.
 
     0.455
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 
 0.448
Cphy_3593
KEGG: mgr:MGG_11654 predicted protein.
       0.435
Cphy_3594
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: ckl:CKL_1000 RpoE; Belongs to the sigma-70 factor family. ECF subfamily.
       0.435
prfC
Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.
       0.422
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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