STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3597PFAM: ABC-2 type transporter; KEGG: lpl:lp_1334 ABC transporter, permease protein. (231 aa)    
Predicted Functional Partners:
Cphy_3598
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: oih:OB0247 ABC transporter ATP-binding protein.
 
  
 0.968
Cphy_3599
Response regulator receiver protein; PFAM: LytTr DNA-binding region; KEGG: bcy:Bcer98_3804 LytTr DNA-binding region.
 
    0.766
Cphy_0360
Hypothetical protein; KEGG: cac:CAC2733 uncharacterized conserved membrane protein.
 
     0.505
Cphy_0359
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbe:Cbei_3668 ABC transporter related.
 
  
 0.468
Cphy_0673
PFAM: Abortive infection protein; KEGG: cef:CE0449 hypothetical protein.
  
  
 0.442
Cphy_0279
KEGG: cbe:Cbei_4038 hypothetical protein.
  
     0.441
Cphy_3580
PFAM: protein of unknown function DUF181; KEGG: abu:Abu_1484 conserved hypothetical protein.
  
  
 0.427
prfC
Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.
       0.425
Cphy_0280
KEGG: cac:CAC3435 hypothetical protein.
  
     0.423
Cphy_0953
KEGG: cdf:CD0593 hypothetical protein.
  
     0.409
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.