Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
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[Homology]
Score
Cphy_3599Response regulator receiver protein; PFAM: LytTr DNA-binding region; KEGG: bcy:Bcer98_3804 LytTr DNA-binding region. (373 aa)    
Predicted Functional Partners:
Cphy_3597
PFAM: ABC-2 type transporter; KEGG: lpl:lp_1334 ABC transporter, permease protein.
 
    0.766
Cphy_0617
Signal transduction histidine kinase, LytS; PFAM: ATP-binding region ATPase domain protein; histidine kinase internal region; KEGG: cbe:Cbei_4963 integral membrane sensor signal transduction histidine kinase.
 
 
 0.572
Cphy_1393
PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: cbe:Cbei_1382 histidine kinase internal region.
 
 
 0.557
Cphy_0292
Signal transduction histidine kinase, LytS; PFAM: ATP-binding region ATPase domain protein; histidine kinase internal region; KEGG: cbe:Cbei_4458 histidine kinase internal region.
 
 
 0.555
Cphy_1582
Signal transduction histidine kinase, LytS; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: tte:TTE0287 predicted ATPase.
 
 
 0.547
Cphy_3598
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: oih:OB0247 ABC transporter ATP-binding protein.
 
    
0.539
Cphy_3857
Signal transduction histidine kinase, LytS; PFAM: histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: csc:Csac_0683 histidine kinase internal region.
 
 
 0.524
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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