STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3607PFAM: peptidase M23B; KEGG: tte:TTE1975 membrane proteins related to metalloendopeptidase. (469 aa)    
Predicted Functional Partners:
Cphy_3608
Protein of unknown function DUF214; Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation. Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
  
 0.937
ftsE
Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
 
  
 0.927
Cphy_1886
PFAM: NLP/P60 protein; Peptidoglycan-binding domain 1 protein; KEGG: gtn:GTNG_3106 cell wall lytic activity.
  
  
 0.750
Cphy_2702
CheC, inhibitor of MCP methylation / FliN fusion protein; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein; KEGG: cth:Cthe_0478 CheC, inhibitor of MCP methylation.
  
   0.722
Cphy_0675
KEGG: dsy:DSY2128 hypothetical protein.
  
  
 0.706
Cphy_1337
PFAM: cell cycle protein; penicillin-binding protein transpeptidase; KEGG: ckl:CKL_3568 predicted peptidoglycan synthetase.
 
  
 0.693
Cphy_1614
PFAM: glycosyl transferase family 51; KEGG: bpu:BPUM_0957 penicillin-binding protein 2C.
 
   
 0.681
Cphy_0497
PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: cno:NT01CX_1810 penicillin-binding protein 1A/1B.
 
   
 0.639
Cphy_0498
PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: cno:NT01CX_1810 penicillin-binding protein 1A/1B.
 
   
 0.632
Cphy_3606
KEGG: cth:Cthe_1857 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; Belongs to the peptidase S41A family.
 
 
 
 0.615
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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