Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3613KEGG: pth:PTH_2777 hypothetical membrane protein. (143 aa)    
Predicted Functional Partners:
Cphy_3612
PFAM: protein of unknown function DUF161; KEGG: cth:Cthe_2703 protein of unknown function DUF161.
       0.717
Cphy_0563
PFAM: S-layer domain protein; Propeptide PepSY amd peptidase M4; KEGG: cth:Cthe_2168 propeptide, PepSY amd peptidase M4.
  
     0.624
Cphy_0804
KEGG: mac:MA3471 hypothetical protein.
  
     0.492
Cphy_2638
Hypothetical protein; KEGG: cdf:CD1921 putative ethanolamine utilization/propanediol conserved hypothetical protein.
  
     0.481
nnrD
Carbohydrate kinase, YjeF related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow t [...]
       0.467
Cphy_2815
PFAM: Rubrerythrin; KEGG: cac:CAC3002 uncharacterized consrved protein, YHJR B.subtilis family.
  
     0.463
Cphy_3335
PFAM: aminoglycoside phosphotransferase; KEGG: cac:CAC2572 possible aminoglycoside phosphotransferase (protein kinase related), diverged.
  
     0.441
Cphy_1089
PFAM: extracellular solute-binding protein family 1; KEGG: dsy:DSY1083 hypothetical protein.
  
     0.433
Cphy_1208
PFAM: O-antigen polymerase; KEGG: bca:BCE_5389 O-antigen polymerase (wzy).
 
     0.431
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.