Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3674KEGG: dsy:DSY1915 hypothetical protein. (333 aa)    
Predicted Functional Partners:
Cphy_3673
KEGG: dsy:DSY1914 hypothetical protein.
 
  
 0.993
Cphy_3675
YdjI; KEGG: bay:RBAM_006610 YdjI.
 
  
 0.979
Cphy_3672
Phage shock protein A, PspA; PFAM: PspA/IM30 family protein; KEGG: dsy:DSY1913 hypothetical protein.
 
  
 0.872
Cphy_3771
KEGG: pin:Ping_1307 predicted antifreeze protein type I.
 
  
 0.820
Cphy_0320
PFAM: FAD dependent oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: ctc:CTC02436 glycerol-3-phosphate dehydrogenase.
    
   0.602
Cphy_3394
PFAM: FAD dependent oxidoreductase; transport-associated; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: tde:TDE0134 oxidoreductase, FAD-dependent.
    
   0.602
Cphy_2236
PFAM: Abortive infection protein; KEGG: dsy:DSY1578 hypothetical protein.
  
     0.593
Cphy_3139
Hypothetical protein.
  
     0.551
Cphy_2717
TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; KEGG: csc:Csac_1257 flagellar M-ring protein FliF.
  
 
   0.476
Cphy_2852
Hypothetical protein.
  
    0.426
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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