STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3702PFAM: protein of unknown function DUF214; KEGG: cth:Cthe_3172 protein of unknown function DUF214. (449 aa)    
Predicted Functional Partners:
Cphy_3704
KEGG: cth:Cthe_3171 S-layer domain-like protein.
 
    0.956
Cphy_3705
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_0366 ABC transporter related.
 
   0.921
Cphy_1445
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: btl:BALH_2221 ABC transporter, ATP-binding protein.
 
 
 0.866
Cphy_1026
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcz:BCZK2229 ABC transporter, ATP-binding protein.
 
 
 0.864
Cphy_3632
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbe:Cbei_4728 ABC transporter related.
 
 
 0.858
Cphy_1857
PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: blo:BL1369 large protein with N-terminal similarity to ATP binding protein of ABC transporter.
  
 
 0.806
Cphy_3703
KEGG: yli:YALI0B09867g hypothetical protein.
       0.782
Cphy_1243
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: spj:MGAS2096_Spy1111 ABC transporter ATP-binding protein.
 
   0.649
Cphy_2078
PFAM: SMC domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_0539 ABC transporter related protein.
 
   0.598
Cphy_1977
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbf:CLI_1432 ABC transporter, ATP-binding protein.
 
   0.592
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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