STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3704KEGG: cth:Cthe_3171 S-layer domain-like protein. (824 aa)    
Predicted Functional Partners:
Cphy_3702
PFAM: protein of unknown function DUF214; KEGG: cth:Cthe_3172 protein of unknown function DUF214.
 
    0.958
Cphy_3703
KEGG: yli:YALI0B09867g hypothetical protein.
       0.741
Cphy_3705
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_0366 ABC transporter related.
 
    0.713
Cphy_1157
PFAM: nucleic acid binding OB-fold tRNA/helicase-type; SMART: Ig domain protein group 2 domain protein; KEGG: cpe:CPE1368 hypothetical protein.
  
     0.700
Cphy_1155
PFAM: nucleic acid binding OB-fold tRNA/helicase-type; KEGG: cpe:CPE1368 hypothetical protein.
  
     0.697
Cphy_3570
Hypothetical protein; KEGG: bcl:ABC1144 sugar ABC transporter substrate-binding protein.
  
     0.678
Cphy_0935
HD superfamily phosphohydrolase-like protein; KEGG: abu:Abu_1539 conserved hypothetical protein.
  
     0.662
Cphy_2029
Hypothetical protein; KEGG: amt:Amet_3803 copper amine oxidase domain protein.
  
     0.638
Cphy_1089
PFAM: extracellular solute-binding protein family 1; KEGG: dsy:DSY1083 hypothetical protein.
  
     0.637
Cphy_0804
KEGG: mac:MA3471 hypothetical protein.
  
     0.627
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.