STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3708PFAM: protein of unknown function DUF58; KEGG: cth:Cthe_1055 protein of unknown function DUF58. (404 aa)    
Predicted Functional Partners:
Cphy_3707
PFAM: transglutaminase domain protein; KEGG: cth:Cthe_1056 transglutaminase-like protein.
 
    0.952
Cphy_3709
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: pho:PH0776 methanol dehydrogenase regulatory protein.
 
  
 0.876
Cphy_3364
PFAM: transglutaminase domain protein; KEGG: cth:Cthe_1056 transglutaminase-like protein.
 
    0.681
Cphy_2506
KEGG: btl:BALH_1130 hypothetical protein.
  
     0.552
Cphy_3365
PFAM: protein of unknown function DUF58; KEGG: cth:Cthe_1055 protein of unknown function DUF58.
  
     0.550
Cphy_3706
KEGG: pdi:BDI_1616 hypothetical protein.
       0.523
Cphy_1292
KEGG: bsu:BG12539 hypothetical protein.
  
     0.479
nnrD
Carbohydrate kinase, YjeF related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow t [...]
     
 0.459
Cphy_3366
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: tte:TTE2215 MoxR-like ATPases.
 
  
 0.442
Cphy_0953
KEGG: cdf:CD0593 hypothetical protein.
  
     0.437
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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