STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3749PFAM: glycoside hydrolase family 18; SMART: chitinase II; KEGG: cth:Cthe_2895 glycoside hydrolase, family 18; Belongs to the glycosyl hydrolase 18 family. (567 aa)    
Predicted Functional Partners:
Cphy_0031
KEGG: cth:Cthe_1340 hypothetical protein.
  
     0.713
Cphy_3752
KEGG: cth:Cthe_0085 negative regulator of genetic competence.
 
     0.695
Cphy_3931
Hypothetical protein.
  
     0.692
Cphy_0034
Hypothetical protein; KEGG: cth:Cthe_1337 type II secretion system protein.
  
     0.683
Cphy_1956
Hypothetical protein; KEGG: cth:Cthe_2543 spore germination protein-like protein.
  
     0.679
Cphy_3748
PFAM: cell wall hydrolase/autolysin; KEGG: cdf:CD0106 germination-specific N-acetylmuramoyl-L-alanine amidase.
  
    0.667
Cphy_1335
Protein of unknown function DUF710; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division.
  
     0.653
Cphy_3552
Hypothetical protein.
  
     0.651
Cphy_3788
Hypothetical protein.
  
     0.624
Cphy_0053
KEGG: cth:Cthe_2712 hypothetical protein.
  
     0.620
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.