STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3753KEGG: cth:Cthe_3092 conserved hypothetical protein, CF-27 family. (66 aa)    
Predicted Functional Partners:
Cphy_2365
KEGG: amt:Amet_3681 hypothetical protein.
  
     0.507
Cphy_1508
KEGG: cbe:Cbei_1845 hypothetical protein.
 
    0.505
Cphy_0870
KEGG: cth:Cthe_0907 hypothetical protein.
  
     0.487
Cphy_3754
4Fe-4S ferredoxin iron-sulfur binding domain protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
       0.486
Cphy_1509
PFAM: Hemerythrin HHE cation binding domain protein; KEGG: cac:CAC0760 uncharacterized conserved protein, YTFE family, possibly metal-binding.
 
     0.449
Cphy_0871
PFAM: Radical SAM domain protein; KEGG: cth:Cthe_0906 radical SAM.
 
     0.433
mraZ
TIGRFAM: MraZ protein; PFAM: protein of unknown function UPF0040; KEGG: tte:TTE1654 MraZ protein; Belongs to the MraZ family.
  
    0.411
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.