STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3777PFAM: peptidase M23B; KEGG: amt:Amet_0360 peptidase M23B. (283 aa)    
Predicted Functional Partners:
Cphy_3794
PFAM: Peptidoglycan-binding LysM; KEGG: cth:Cthe_2402 peptidoglycan-binding LysM.
 
  
 0.784
Cphy_3483
PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: cth:Cthe_0559 single-strand binding protein/primosomal replication protein N.
 
    0.751
Cphy_2517
KEGG: cth:Cthe_0838 hypothetical protein.
  
  
 0.740
Cphy_2316
PFAM: Stage II sporulation P family protein; KEGG: cth:Cthe_1328 stage II sporulation P.
  
     0.702
Cphy_2520
KEGG: amt:Amet_2496 sporulation stage III, protein AE.
  
     0.680
Cphy_2613
PFAM: protein of unknown function DUF1429; KEGG: amt:Amet_3035 protein of unknown function DUF1429.
  
     0.677
Cphy_0136
Hypothetical protein; KEGG: amt:Amet_0170 spore cortex biosynthesis protein YabQ.
  
     0.663
Cphy_1320
PFAM: small acid-soluble spore protein alpha/beta type; KEGG: cbf:CLI_2367 small, acid-soluble spore protein.
  
     0.655
Cphy_2702
CheC, inhibitor of MCP methylation / FliN fusion protein; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein; KEGG: cth:Cthe_0478 CheC, inhibitor of MCP methylation.
   
   0.654
Cphy_0374
PFAM: small acid-soluble spore protein alpha/beta type; KEGG: cbf:CLI_2367 small, acid-soluble spore protein.
  
     0.652
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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