STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3789PFAM: Domain of unknown function DUF1934; KEGG: tte:TTE2534 hypothetical protein. (142 aa)    
Predicted Functional Partners:
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
  
    0.796
ddl-2
D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
  
    0.744
argS
KEGG: fta:FTA_1684 arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase.
  
    0.653
argS-2
KEGG: amt:Amet_1714 arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase.
  
    0.653
Cphy_0106
TIGRFAM: primosome, DnaD subunit; PFAM: DnaD and phage-associated region; KEGG: tte:TTE2692 hypothetical protein.
  
     0.612
Cphy_0550
Coproporphyrinogen dehydrogenase; KEGG: cth:Cthe_1341 radical SAM; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
   
    0.605
Cphy_3553
Hypothetical protein.
  
     0.580
Cphy_2681
KEGG: bpu:BPUM_2222 hypothetical protein.
  
    0.529
Cphy_1961
PFAM: phosphatidylserine decarboxylase-related; KEGG: cac:CAC0799 phosphatidylserine decarboxylase; Belongs to the phosphatidylserine decarboxylase family.
   
    0.518
Cphy_2293
Hypothetical protein.
  
    0.505
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.