STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3794PFAM: Peptidoglycan-binding LysM; KEGG: cth:Cthe_2402 peptidoglycan-binding LysM. (523 aa)    
Predicted Functional Partners:
Cphy_2517
KEGG: cth:Cthe_0838 hypothetical protein.
  
  
 0.821
Cphy_3824
TIGRFAM: spore coat protein, CotS family; KEGG: ctc:CTC00273 spore coat protein.
 
   
 0.792
Cphy_3777
PFAM: peptidase M23B; KEGG: amt:Amet_0360 peptidase M23B.
 
   
 0.776
Cphy_2518
Hypothetical protein; KEGG: cth:Cthe_0839 stage III sporulation protein AG.
  
    0.770
Cphy_3483
PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: cth:Cthe_0559 single-strand binding protein/primosomal replication protein N.
  
     0.764
Cphy_3425
Hypothetical protein.
  
     0.763
Cphy_2520
KEGG: amt:Amet_2496 sporulation stage III, protein AE.
  
    0.760
Cphy_2316
PFAM: Stage II sporulation P family protein; KEGG: cth:Cthe_1328 stage II sporulation P.
  
     0.758
Cphy_3896
Hypothetical protein; KEGG: tva:TVAG_244940 viral A-type inclusion protein, putative Pfam: DUF2013 Spectrin DUF1945 EzrA Vicilin_N Myosin_tail_1 ATG16 HrpB7 Tektin DUF869 KAR9 Pox_A_type_inc Prefoldin_2 Rad50_zn_hook Hemerythrin Filament Microtub_assoc SF-assemblin Apolipoprotein MpPF2 BRE1 Phage_GP20 PROSITE: GLU_RICH.
 
    0.755
Cphy_3435
KEGG: cdf:CD2800 hypothetical protein.
  
     0.750
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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