STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3797KEGG: tte:TTE0888 hypothetical protein. (115 aa)    
Predicted Functional Partners:
Cphy_3796
PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: tte:TTE0889 predicted metal-dependent phosphoesterase (PHP family).
 
     0.960
Cphy_3798
Fe-S cluster domain protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Fe-S cluster domain protein; KEGG: tte:TTE0887 ferredoxin 2.
 
   
 0.954
Cphy_3800
PFAM: DRTGG domain protein; KEGG: cth:Cthe_0333 hypothetical protein.
 
  
 0.916
Cphy_3799
KEGG: cth:Cthe_0334 putative anti-sigma regulatory factor, serine/threonine protein kinase.
 
   
 0.912
Cphy_3802
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: pdi:BDI_1092 hypothetical protein.
 
   
 0.847
Cphy_3803
KEGG: csc:Csac_1862 hypothetical protein.
 
   
 0.847
Cphy_0091
Protein serine/threonine phosphatase; PFAM: Stage II sporulation E family protein; KEGG: cth:Cthe_0427 serine phosphatase.
 
     0.608
Cphy_0093
KEGG: cth:Cthe_0425 hypothetical protein.
 
     0.596
Cphy_0092
Putative PAS/PAC sensor protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; hydrogenase large subunit domain protein; Fe-S cluster domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: tte:TTE0697 ferredoxin 2.
 
     0.556
Cphy_3804
NADH dehydrogenase (quinone); PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: csc:Csac_1863 NADH dehydrogenase (quinone).
 
   
 0.503
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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