STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3799KEGG: cth:Cthe_0334 putative anti-sigma regulatory factor, serine/threonine protein kinase. (140 aa)    
Predicted Functional Partners:
Cphy_3800
PFAM: DRTGG domain protein; KEGG: cth:Cthe_0333 hypothetical protein.
   
 0.987
Cphy_2838
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: pth:PTH_0142 hypothetical protein.
  
  
 0.957
Cphy_3798
Fe-S cluster domain protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Fe-S cluster domain protein; KEGG: tte:TTE0887 ferredoxin 2.
   
 0.945
Cphy_3797
KEGG: tte:TTE0888 hypothetical protein.
 
   
 0.907
Cphy_3796
PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: tte:TTE0889 predicted metal-dependent phosphoesterase (PHP family).
 
     0.905
Cphy_0091
Protein serine/threonine phosphatase; PFAM: Stage II sporulation E family protein; KEGG: cth:Cthe_0427 serine phosphatase.
 
 
 0.898
Cphy_3802
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: pdi:BDI_1092 hypothetical protein.
 
  
 0.846
Cphy_0476
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; anti-sigma F factor antagonist; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: amt:Amet_2212 anti-sigma-factor antagonist.
  
 
 0.838
Cphy_3803
KEGG: csc:Csac_1862 hypothetical protein.
 
   
 0.838
Cphy_0478
RNA polymerase, sigma 28 subunit, FliA/WhiG family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
 
 0.795
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.