STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3828PFAM: lipolytic protein G-D-S-L family; KEGG: ctc:CTC01503 phospholipase-subfamily protein. (375 aa)    
Predicted Functional Partners:
Cphy_0232
KEGG: ctc:CTC00591 hypothetical protein.
 
    0.638
Cphy_3827
PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; KEGG: ctc:CTC01205 tRNA nucleotidyltransferase (CCA-adding enzyme).
       0.597
Cphy_2627
Hypothetical protein; KEGG: mmu:100043744 similar to retinitis pigmentosa GTPase regulator.
  
     0.488
Cphy_3595
KEGG: cpf:CPF_1765 hypothetical protein.
 
    0.465
Cphy_3376
PFAM: protein of unknown function DUF624; KEGG: tte:TTE1959 hypothetical protein.
 
    0.418
Cphy_3432
KEGG: cdf:CD2542 hypothetical protein.
 
    0.411
Cphy_0231
PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: cno:NT01CX_1336 alginate O-acetylation protein; Belongs to the membrane-bound acyltransferase family.
 
    0.410
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.