STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3841PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsy:DSY1489 hypothetical protein. (286 aa)    
Predicted Functional Partners:
Cphy_3840
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY1490 hypothetical protein.
 
 0.994
Cphy_3870
KEGG: dsy:DSY1488 hypothetical protein.
 
 
 0.950
Cphy_1153
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY4445 hypothetical protein.
 
 0.830
Cphy_1152
PFAM: NMT1/THI5 like domain protein; KEGG: dsy:DSY4446 hypothetical protein.
 
 
 0.742
Cphy_0803
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbf:CLI_3310 ABC transporter, ATP-binding protein.
  
 
 0.739
Cphy_1347
PFAM: NMT1/THI5 like domain protein; KEGG: cth:Cthe_2575 hypothetical protein.
  
 
 0.674
trpB
Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
     
 0.434
trpA
Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
       0.429
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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