Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Cphy_3851Hypothetical protein; KEGG: pfa:PF11_0507 antigen 332. (1136 aa)    
Predicted Functional Partners:
Cphy_3849
Hypothetical protein; KEGG: lbl:LBL_1556 endoflagellar biosynthesis chaperone.
 
     0.913
Cphy_2702
CheC, inhibitor of MCP methylation / FliN fusion protein; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein; KEGG: cth:Cthe_0478 CheC, inhibitor of MCP methylation.
  
 
 0.869
Cphy_2712
KEGG: cth:Cthe_0470 hypothetical protein.
 
    0.787
Cphy_3850
Flagellin domain protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
  
 
 0.787
Cphy_0245
KEGG: cth:Cthe_2622 hypothetical protein.
  
    0.783
Cphy_0307
TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: csc:Csac_1665 flagellar hook-associated protein 3.
  
 
 0.783
Cphy_0043
Hypothetical protein.
  
   
 0.777
Cphy_2842
Hypothetical protein; KEGG: ehi:82.t00025 viral A-type inclusion protein repeat, putative Pfam: Nha1_C DUF148 ERM Prefoldin_2 WXG100 Vicilin_N TBPIP Myosin_tail_1 Filament YscO Bacillus_HBL EzrA DUF948 Rab5-bind Laminin_I MpPF2 Vps51 MSG Spectrin LMP PROSITE: GLU_RICH LYS_RICH.
  
   
 0.777
Cphy_3823
KEGG: rno:679495 hypothetical protein LOC679495.
  
  
 0.777
Cphy_0146
Hypothetical protein.
  
     0.774
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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