STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3863PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_1189 ABC transporter related protein. (329 aa)    
Predicted Functional Partners:
Cphy_3864
PFAM: protein of unknown function DUF990; KEGG: cth:Cthe_1188 protein of unknown function DUF990.
 
  
 0.955
Cphy_3865
PFAM: protein of unknown function DUF990; KEGG: cth:Cthe_1187 protein of unknown function DUF990.
 
  
 0.907
Cphy_0979
PFAM: protein of unknown function DUF990; KEGG: cpr:CPR_0171 ABC transporter, permease protein, putative.
 
  
 0.840
Cphy_2674
KEGG: tde:TDE0486 membrane protein, putative.
 
  
 0.837
Cphy_1129
ABC-type uncharacterized transport system permease component-like protein; KEGG: sth:STH1198 ABC transporter permease protein.
 
  
 0.836
Cphy_3779
KEGG: tde:TDE0486 membrane protein, putative.
 
  
 0.836
Cphy_0980
PFAM: protein of unknown function DUF990; KEGG: gtn:GTNG_0486 ABC transporter (permease).
 
  
 0.813
Cphy_2675
PFAM: protein of unknown function DUF990; KEGG: tde:TDE0485 membrane protein, putative.
 
  
 0.811
Cphy_3778
PFAM: protein of unknown function DUF990; KEGG: tde:TDE0485 membrane protein, putative.
 
  
 0.810
Cphy_1130
PFAM: protein of unknown function DUF990; KEGG: sth:STH1199 hypothetical protein.
 
  
 0.809
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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