STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3871KEGG: cbe:Cbei_4440 hypothetical protein. (82 aa)    
Predicted Functional Partners:
Cphy_0561
PFAM: transport system permease protein; ABC-3 protein; KEGG: ctc:CTC00784 iron(III) dicitrate transport system permease protein fecD; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 
 0.876
Cphy_2081
TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Miro domain protein; KEGG: cth:Cthe_0042 small GTP-binding protein.
 
   
 0.876
Cphy_2083
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cth:Cthe_1839 radical SAM.
 
  
 0.876
Cphy_2393
PFAM: transport system permease protein; ABC-3 protein; KEGG: bpu:BPUM_3521 iron (Fe) ABC superfamily ATP binding cassette transporter, membrane protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 
 0.876
Cphy_2082
PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; KEGG: cbe:Cbei_4439 biotin and thiamin synthesis associated.
 
   
 0.864
Cphy_0560
PFAM: periplasmic binding protein; KEGG: cth:Cthe_1754 periplasmic binding protein.
  
 
 0.746
Cphy_2392
PFAM: periplasmic binding protein; KEGG: dsy:DSY3874 hypothetical protein.
  
 
 0.746
Cphy_2666
KEGG: amt:Amet_3774 periplasmic binding protein.
  
 
 0.746
Cphy_0844
Hypothetical protein.
  
 
 0.711
Cphy_3870
KEGG: dsy:DSY1488 hypothetical protein.
  
    0.575
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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