STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3888Chromosome segregation ATPase-like protein; KEGG: cpr:CPR_0357 hypothetical protein. (1474 aa)    
Predicted Functional Partners:
Cphy_3889
KEGG: cpr:CPR_0356 hypothetical protein.
       0.834
Cphy_1308
PFAM: APHP domain protein; KEGG: fjo:Fjoh_3203 Ig domain protein, group 2 domain protein.
  
     0.731
Cphy_2781
Hypothetical protein.
  
     0.725
Cphy_2859
PFAM: helix-turn-helix domain protein; KEGG: btk:BT9727_1061 probable transcriptional regulator.
  
    0.663
Cphy_3351
PFAM: glycosyl transferase family 4; KEGG: tde:TDE2249 phospho-N-acetylmuramoyl-pentapeptide-transferase.
 
    0.641
Cphy_0917
KEGG: cbh:CLC_1692 hypothetical protein.
  
     0.634
Cphy_0927
KEGG: cbh:CLC_1692 hypothetical protein.
  
     0.634
Cphy_3890
KEGG: bce:BC0947 hypothetical protein.
       0.607
Cphy_0676
Hypothetical protein; KEGG: bcz:BCZK1145 acetyltransferase, GNAT family.
  
     0.596
Cphy_3292
KEGG: cth:Cthe_2069 hypothetical protein.
  
     0.532
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.