STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3904PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ckl:CKL_0384 predicted ABC transporter, ATPase component. (292 aa)    
Predicted Functional Partners:
Cphy_3903
PFAM: regulatory protein GntR HTH; KEGG: ckl:CKL_0385 transcriptional regulator.
 
    0.965
Cphy_3905
Transporter protein; KEGG: ckl:CKL_0383 predicted transporter protein.
 
   
 0.909
Cphy_2235
PFAM: regulatory protein GntR HTH; KEGG: cac:CAC0265 transcriptional regulator, GntR family.
 
    0.620
Cphy_1279
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; KEGG: drm:Dred_1515 regulatory protein GntR, HTH.
 
    0.542
Cphy_2319
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; KEGG: drm:Dred_3243 regulatory protein GntR, HTH.
 
  
 0.492
Cphy_0073
PFAM: regulatory protein GntR HTH; KEGG: cac:CAC0599 transcriptional regulator, GntR family.
  
    0.490
Cphy_1635
KEGG: bca:BCE_1989 membrane protein, putative.
 
 
 0.444
Cphy_0944
KEGG: dsy:DSY2794 hypothetical protein.
 
   0.418
Cphy_2114
KEGG: cth:Cthe_1535 hypothetical protein.
 
   0.404
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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