STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3914PFAM: protein of unknown function DUF327; KEGG: cth:Cthe_2106 protein of unknown function DUF327. (146 aa)    
Predicted Functional Partners:
Cphy_3913
TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: amt:Amet_0084 DNA polymerase III, delta prime subunit.
 
     0.845
Cphy_3849
Hypothetical protein; KEGG: lbl:LBL_1556 endoflagellar biosynthesis chaperone.
 
 
 0.821
Cphy_0312
Flagellar hook-associated 2 domain protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
 
    0.817
Cphy_0303
PFAM: Anti-sigma-28 factor FlgM family protein; KEGG: csc:Csac_1662 anti-sigma-28 factor, FlgM.
 
 
   0.806
Cphy_0304
KEGG: cth:Cthe_2245 hypothetical protein.
 
     0.789
Cphy_0249
KEGG: cth:Cthe_2247 regulatory protein, MerR.
 
     0.786
fliE
PFAM: flagellar hook-basal body complex protein FliE; KEGG: fno:Fnod_1716 flagellar hook-basal body complex subunit FliE.
 
   0.786
Cphy_3293
KEGG: cno:NT01CX_1368 hypothetical protein.
 
     0.774
Cphy_3912
PFAM: PSP1 domain protein; KEGG: ckl:CKL_3792 predicted peptidase.
  
  
 0.769
Cphy_2713
TIGRFAM: flagellar export protein FliJ; KEGG: cth:Cthe_0469 flagellar export protein FliJ.
 
     0.766
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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