STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Cooccurrence
Coexpression
Experiments
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[Homology]
Score
Cphy_3924PFAM: protein of unknown function DUF159; KEGG: csc:Csac_0196 protein of unknown function DUF159; Belongs to the SOS response-associated peptidase family. (220 aa)    
Predicted Functional Partners:
Cphy_2102
PFAM: integrase family protein; KEGG: cbe:Cbei_1373 phage integrase family protein.
   
    0.440
Cphy_2195
PFAM: integrase family protein; KEGG: cdf:CD1932 putative tyrosine recombinase; Belongs to the 'phage' integrase family.
   
    0.440
Cphy_2593
PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: amt:Amet_2523 tyrosine recombinase XerD; Belongs to the 'phage' integrase family.
   
    0.440
Cphy_2615
PFAM: protein of unknown function DUF1538; KEGG: cbo:CBO2972 membrane protein.
   
    0.440
Cphy_3145
PFAM: integrase family protein; KEGG: tte:TTE2127 integrase; Belongs to the 'phage' integrase family.
   
    0.440
Cphy_3451
PFAM: integrase family protein; KEGG: cth:Cthe_2286 phage integrase.
   
    0.440
Cphy_3508
PFAM: integrase family protein; KEGG: mta:Moth_1796 phage integrase; Belongs to the 'phage' integrase family.
   
    0.440
Cphy_3925
PFAM: iron-containing alcohol dehydrogenase; Aldehyde Dehydrogenase_; KEGG: cth:Cthe_0423 iron-containing alcohol dehydrogenase.
       0.439
Cphy_3144
KEGG: ssv:SSU98_1061 hypothetical protein.
   
    0.435
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.