STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_3928L-ribulose-5-phosphate 4-epimerase; PFAM: class II aldolase/adducin family protein; KEGG: cac:CAC1341 ribulose-5-phosphate 4-epimerase family protein. (240 aa)    
Predicted Functional Partners:
xylB
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: amt:Amet_0591 xylulokinase.
 
 
 0.950
Cphy_2484
PFAM: ribulose-phosphate 3-epimerase; KEGG: cbe:Cbei_1153 ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
  
 
 0.924
Cphy_2729
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: cbe:Cbei_0450 xylose isomerase domain protein TIM barrel.
    
 0.905
Cphy_1145
PFAM: carbohydrate kinase FGGY; KEGG: cbe:Cbei_4452 carbohydrate kinase, FGGY.
 
  
 0.835
Cphy_0584
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
  
  
 0.591
Cphy_1768
KEGG: cbe:Cbei_0751 PTS system, glucose subfamily, IIA subunit; TIGRFAM: PTS system, glucose subfamily, IIA subunit; PTS system, glucose-like IIB subunint; PFAM: sugar-specific permease EIIA 1 domain; phosphotransferase system PTS EIIB protein; phosphotransferase system EIIC.
   
  
 0.511
Cphy_3258
PFAM: dihydropteroate synthase DHPS; homocysteine S-methyltransferase; Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; KEGG: cth:Cthe_0645 homocysteine S-methyltransferase.
  
  
 0.509
Cphy_3927
Mn2+-dependent serine/threonine protein kinase; PFAM: aminoglycoside phosphotransferase; KEGG: cth:Cthe_0424 aminoglycoside phosphotransferase.
  
 
 0.499
Cphy_1169
Alpha-N-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: gtn:GTNG_1791 alpha-L-arabinofuranosidase.
 
  
 0.481
Cphy_0265
KEGG: sbl:Sbal_2840 hypothetical protein.
   
 0.471
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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