STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANB36986.1Exodeoxyribonuclease VII small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (80 aa)    
Predicted Functional Partners:
XseA
Exodeoxyribonuclease VII large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.997
ANB36985.1
Farnesyl-diphosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.893
ANB36987.1
Acetoin utilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.846
dxs
1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.
     
 0.772
ANB36989.1
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.694
IspDF
Bifunctional 2-C-methyl-D-erythritol 4-phosphatecytidylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.623
ANB37475.1
Hydroxymethylbilane synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.567
CrtE
Geranylgeranyl pyrophosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.548
PolA
DNA polymerase I; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.542
PetR
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.523
Your Current Organism:
Rhodovulum sulfidophilum
NCBI taxonomy Id: 35806
Other names: ATCC 35886, LMG 5201, LMG:5201, R. sulfidophilum, Rhodobacter sulfidiphilus, Rhodobacter sulfidophilus, Rhodopseudomonas sulfidophila, strain Hansen W4
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