STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PufBLight-harvesting protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (48 aa)    
Predicted Functional Partners:
ANB37208.1
Light-harvesting protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
PufL
Photosynthetic reaction center subunit L; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
PufM
Photosynthetic reaction center subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.999
PufC
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
 
 0.993
PuhA
Photosynthetic reaction center subunit H; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.990
BchZ
Chlorophyllide reductase subunit Z; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.959
BchY
Chlorophyllide reductase subunit Y; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.924
AcsF
Magnesium-protoporphyrin IX monomethyl ester cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.870
BchC
Chlorophyll synthesis pathway protein BchC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.862
pufQ
Protein pufQ; Required for bacteriochlorophyll biosynthesis. Directly involved in the assembly of both the B875 and B800-850 pigment-protein complexes.
     
 0.837
Your Current Organism:
Rhodovulum sulfidophilum
NCBI taxonomy Id: 35806
Other names: ATCC 35886, LMG 5201, LMG:5201, R. sulfidophilum, Rhodobacter sulfidiphilus, Rhodobacter sulfidophilus, Rhodopseudomonas sulfidophila, strain Hansen W4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.