STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RuvCCrossover junction endodeoxyribonuclease RuvC; Derived by automated computational analysis using gene prediction method: Protein Homology. (168 aa)    
Predicted Functional Partners:
RuvA
Holliday junction DNA helicase RuvA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
ruvB
Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.
 
 
 0.992
PolA
DNA polymerase I; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.727
ANB37760.1
Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.725
ANB37759.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.710
ANB39975.1
Repressor LexA; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.658
ANB36902.1
Peptide deformylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.629
ANB39696.1
AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.627
tolB
Translocation protein TolB; Forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.611
ANB36903.1
N-formylmethionyl-tRNA deformylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.560
Your Current Organism:
Rhodovulum sulfidophilum
NCBI taxonomy Id: 35806
Other names: ATCC 35886, LMG 5201, LMG:5201, R. sulfidophilum, Rhodobacter sulfidiphilus, Rhodobacter sulfidophilus, Rhodopseudomonas sulfidophila, strain Hansen W4
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