STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CcmBHeme exporter protein CcmB; Derived by automated computational analysis using gene prediction method: Protein Homology. (218 aa)    
Predicted Functional Partners:
CcmA
Heme ABC transporter ATP-binding protein CcmA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.999
ANB37882.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
ANB39930.1
Thiol:disulfide interchange protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.959
ANB37883.1
Heme exporter protein CcmD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.952
ANB38344.1
Cytochrome c biogenesis protein CcmE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.931
ANB38346.1
Cytochrome c-type biogenesis protein; required for the transfer of heme to apocytochrome c; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.877
ANB39973.1
Cytochrome C biogenesis protein CcdA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.830
ANB37880.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.643
SecF
Preprotein translocase subunit SecF; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.567
YajC
Preprotein translocase subunit YajC; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.565
Your Current Organism:
Rhodovulum sulfidophilum
NCBI taxonomy Id: 35806
Other names: ATCC 35886, LMG 5201, LMG:5201, R. sulfidophilum, Rhodobacter sulfidiphilus, Rhodobacter sulfidophilus, Rhodopseudomonas sulfidophila, strain Hansen W4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.