STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rimORibosomal protein S12 methylthiotransferase; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily. (462 aa)    
Predicted Functional Partners:
ANB38023.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.617
ANB36879.1
S26 family signal peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.572
ANB38021.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.526
ANB38560.1
tRNA dihydrouridine synthase DusA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.479
TrmE
tRNA uridine(34) 5-carboxymethylaminomethyl synthesis GTPase MnmE; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.478
rlmN
23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.
 
  
 0.476
ANB38082.1
Peptide chain release factor 1; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.473
TruB
tRNA pseudouridine(55) synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.463
ANB38020.1
Cation tolerance protein CutA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.425
ANB37956.1
ATP-dependent helicase HrpB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
 0.408
Your Current Organism:
Rhodovulum sulfidophilum
NCBI taxonomy Id: 35806
Other names: ATCC 35886, LMG 5201, LMG:5201, R. sulfidophilum, Rhodobacter sulfidiphilus, Rhodobacter sulfidophilus, Rhodopseudomonas sulfidophila, strain Hansen W4
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.