STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOB34854.1Ligand-gated channel; Derived by automated computational analysis using gene prediction method: Protein Homology. (819 aa)    
Predicted Functional Partners:
AOB34853.1
Transmembrane sensor protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.978
AOB34852.1
RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.964
BBB42_04685
Peptidase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.926
BBB42_01150
TonB-dependent receptor; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.702
AOB35052.1
Energy transducer TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.693
BBB42_07665
2-polyprenyl-6-methoxyphenol hydroxylase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.689
AOB34492.1
Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.644
AOB34431.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
   
 0.563
AOB36861.1
Iron dicitrate transport regulator FecR; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.522
BBB42_13775
TonB-dependent receptor; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.508
Your Current Organism:
Bordetella holmesii
NCBI taxonomy Id: 35814
Other names: ATCC 51541, B. holmesii, CCUG 34073, CDC F5101, CDC nonoxidizer group 2 (NO-2), CIP 104394, DSM 13416, LMG 15945, LMG:15945, NCTC 12912
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