STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOB35678.1Glutamine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family. (247 aa)    
Predicted Functional Partners:
BBB42_09330
ABC transporter ATP-binding protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.996
AOB35773.1
Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.983
glnP
Glutamine ABC transporter permease GlnP; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.983
AOB37261.1
Cysteine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.982
ehuC
Ectoine/hydroxyectoine ABC transporter permease subunit EhuC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.982
ehuD
Ectoine/hydroxyectoine ABC transporter permease subunit EhuD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.982
AOB34441.1
Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.949
AOB35772.1
Polar amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.836
glnQ
Similar to ATP-binding component of ABC transporters; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.834
AOB34712.1
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.823
Your Current Organism:
Bordetella holmesii
NCBI taxonomy Id: 35814
Other names: ATCC 51541, B. holmesii, CCUG 34073, CDC F5101, CDC nonoxidizer group 2 (NO-2), CIP 104394, DSM 13416, LMG 15945, LMG:15945, NCTC 12912
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.