Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AFU45658.1Hypothetical protein. (179 aa)    
Predicted Functional Partners:
AFU45659.1
Hypothetical protein.
       0.737
AFU45660.1
Hypothetical protein.
       0.737
AFU45661.1
Hypothetical protein.
       0.737
AFU45662.1
Hypothetical protein.
       0.676
AFU45663.1
Hypothetical protein.
       0.563
AFU45657.1
Hypothetical protein.
       0.550
AFU45664.1
Hypothetical protein.
       0.438
AFU45665.1
Hypothetical protein.
       0.402
AFU45666.1
Prophage tail length tape measure; COG5281 Phage-related minor tail protein.
       0.400
AFU45667.1
Hypothetical protein.
       0.400
Your Current Organism:
Acidovorax sp. KKS102
NCBI taxonomy Id: 358220
Other names: A. sp. KKS102
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