STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFU46448.1COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein. (310 aa)    
Predicted Functional Partners:
AFU46447.1
Thioesterase superfamily protein; COG0824 Predicted thioesterase.
       0.812
AFU46490.1
COG0553 Superfamily II DNA/RNA helicases, SNF2 family.
  
 
 0.806
AFU48367.1
COG2940 Proteins containing SET domain.
  
 0.718
htpG
Heat shock protein 90; Molecular chaperone. Has ATPase activity.
    
 0.705
AFU44992.1
Hypothetical protein.
    
 0.648
AFU46449.1
Phasin family protein.
  
    0.528
AFU46010.1
SNF2-like protein; COG0553 Superfamily II DNA/RNA helicases, SNF2 family.
    
 0.513
AFU46479.1
Hypothetical protein; COG0504 CTP synthase (UTP-ammonia lyase).
    
 0.513
AFU46648.1
SNF2-like protein; COG0553 Superfamily II DNA/RNA helicases, SNF2 family.
    
 0.513
AFU45178.1
Hypothetical protein; COG0381 UDP-N-acetylglucosamine 2-epimerase.
    
 0.482
Your Current Organism:
Acidovorax sp. KKS102
NCBI taxonomy Id: 358220
Other names: A. sp. KKS102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.