Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| B4167_0090 | rplE | B4167_0090 | B4167_0100 | Hypothetical protein; C-125 initiation factor IF-I, RNA polymerase alpha subunit and ribosomal proteins, partial and complete cds. | Hypothetical protein; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | 0.997 |
| B4167_0090 | rplF | B4167_0090 | B4167_0097 | Hypothetical protein; C-125 initiation factor IF-I, RNA polymerase alpha subunit and ribosomal proteins, partial and complete cds. | Hypothetical protein; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.998 |
| B4167_0090 | rplN | B4167_0090 | B4167_0102 | Hypothetical protein; C-125 initiation factor IF-I, RNA polymerase alpha subunit and ribosomal proteins, partial and complete cds. | Hypothetical protein; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.997 |
| B4167_0090 | rplR | B4167_0090 | B4167_0096 | Hypothetical protein; C-125 initiation factor IF-I, RNA polymerase alpha subunit and ribosomal proteins, partial and complete cds. | Hypothetical protein; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.999 |
| B4167_0090 | rplV | B4167_0090 | B4167_0107 | Hypothetical protein; C-125 initiation factor IF-I, RNA polymerase alpha subunit and ribosomal proteins, partial and complete cds. | Hypothetical protein; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.998 |
| B4167_0090 | rplX | B4167_0090 | B4167_0101 | Hypothetical protein; C-125 initiation factor IF-I, RNA polymerase alpha subunit and ribosomal proteins, partial and complete cds. | Hypothetical protein; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.999 |
| B4167_0090 | rpmC | B4167_0090 | B4167_0104 | Hypothetical protein; C-125 initiation factor IF-I, RNA polymerase alpha subunit and ribosomal proteins, partial and complete cds. | LSU ribosomal protein L29p (L35e); Belongs to the universal ribosomal protein uL29 family. | 0.998 |
| B4167_0090 | rpmD | B4167_0090 | B4167_0094 | Hypothetical protein; C-125 initiation factor IF-I, RNA polymerase alpha subunit and ribosomal proteins, partial and complete cds. | LSU ribosomal protein L30p (L7e). | 0.998 |
| B4167_0090 | rpsH | B4167_0090 | B4167_0098 | Hypothetical protein; C-125 initiation factor IF-I, RNA polymerase alpha subunit and ribosomal proteins, partial and complete cds. | Hypothetical protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.994 |
| B4167_0090 | rpsQ | B4167_0090 | B4167_0103 | Hypothetical protein; C-125 initiation factor IF-I, RNA polymerase alpha subunit and ribosomal proteins, partial and complete cds. | Hypothetical protein; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.996 |
| rplE | B4167_0090 | B4167_0100 | B4167_0090 | Hypothetical protein; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | Hypothetical protein; C-125 initiation factor IF-I, RNA polymerase alpha subunit and ribosomal proteins, partial and complete cds. | 0.997 |
| rplE | rplF | B4167_0100 | B4167_0097 | Hypothetical protein; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | Hypothetical protein; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.999 |
| rplE | rplN | B4167_0100 | B4167_0102 | Hypothetical protein; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | Hypothetical protein; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.999 |
| rplE | rplR | B4167_0100 | B4167_0096 | Hypothetical protein; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | Hypothetical protein; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.999 |
| rplE | rplV | B4167_0100 | B4167_0107 | Hypothetical protein; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | Hypothetical protein; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.999 |
| rplE | rplX | B4167_0100 | B4167_0101 | Hypothetical protein; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | Hypothetical protein; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.999 |
| rplE | rpmC | B4167_0100 | B4167_0104 | Hypothetical protein; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | LSU ribosomal protein L29p (L35e); Belongs to the universal ribosomal protein uL29 family. | 0.999 |
| rplE | rpmD | B4167_0100 | B4167_0094 | Hypothetical protein; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | LSU ribosomal protein L30p (L7e). | 0.998 |
| rplE | rpsH | B4167_0100 | B4167_0098 | Hypothetical protein; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | Hypothetical protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.999 |
| rplE | rpsQ | B4167_0100 | B4167_0103 | Hypothetical protein; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | Hypothetical protein; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.998 |
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