STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SleBHypothetical protein; Spore cortex-lytic enzyme, lytic transglycosylase SleB. (323 aa)    
Predicted Functional Partners:
YpeB
Spore germination protein YpeB.
 
  
 0.969
SpoVAC-3
Stage V sporulation protein AC (SpoVAC).
  
  
 0.685
SpoIIR
Stage II sporulation protein required for processing of pro-sigma-E (SpoIIR).
 
   
 0.672
SpoVAC-2
Stage V sporulation protein AC (SpoVAC).
  
  
 0.667
SpoVAC
Stage V sporulation protein AC (SpoVAC).
  
  
 0.658
spoIIID
Stage III sporulation protein D.
  
  
 0.655
B4167_0430
Stage II sporulation protein P.
  
  
 0.654
SpoIIGA
Hypothetical protein; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR.
  
   
 0.650
spoVAD
Stage V sporulation protein AD (SpoVAD).
  
  
 0.629
gpr
Endopeptidase spore protease Gpr; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
  
 0.603
Your Current Organism:
Bacillus thermoamylovorans
NCBI taxonomy Id: 35841
Other names: B. thermoamylovorans, Bacillus sp. LMG 18084, Bacillus sp. R-6546, Bacillus sp. R-7440, Bacillus sp. R-7764, LMG 18084, LMG:18084, Lactobacter thermoamylovorans, strain DKP
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.