STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mceMethylmalonyl-CoA epimerase. (133 aa)    
Predicted Functional Partners:
B4167_0706
Acetyl-coenzyme A carboxyl transferase alpha chain.
 
 
 0.996
B4167_3766
Methylmalonyl-CoA mutase.
  
 0.987
B4167_3767
Methylmalonyl-CoA mutase.
 
  
 0.987
B4167_3765
Putative periplasmic protein kinase ArgK and related GTPases of G3E family.
   
 0.899
B4167_1929
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit.
 
 
 0.895
icmF
B12 binding domain; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
 
   
 0.699
B4167_1906
Hypothetical protein; Fumarylacetoacetate hydrolase family protein.
  
  
 0.553
B4167_0708
Protein erfK/srfK.
       0.445
B4167_1015
Membrane protein, putative.
  
  
 0.438
B4167_1932
Biotin carboxyl carrier protein of methylcrotonyl-CoA carboxylase.
  
  
 0.438
Your Current Organism:
Bacillus thermoamylovorans
NCBI taxonomy Id: 35841
Other names: B. thermoamylovorans, Bacillus sp. LMG 18084, Bacillus sp. R-6546, Bacillus sp. R-7440, Bacillus sp. R-7764, LMG 18084, LMG:18084, Lactobacter thermoamylovorans, strain DKP
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