STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B4167_1070Protein of unknown function DUF208; Belongs to the 'phage' integrase family. (341 aa)    
Predicted Functional Partners:
B4167_1071
Hypothetical protein.
       0.773
B4167_2088
Hypothetical protein; Integrase.
  
     0.666
B4167_1069
Hypothetical protein.
 
    0.658
B4167_1655
Late competence protein.
   
    0.461
B4167_3632
Hypothetical protein.
 
     0.431
B4167_3685
Prephenate dehydrogenase.
  
    0.428
B4167_2595
Gll2498 protein; Belongs to the SOS response-associated peptidase family.
   
    0.404
whiA
Hypothetical protein; Involved in cell division and chromosome segregation.
   
    0.404
Your Current Organism:
Bacillus thermoamylovorans
NCBI taxonomy Id: 35841
Other names: B. thermoamylovorans, Bacillus sp. LMG 18084, Bacillus sp. R-6546, Bacillus sp. R-7440, Bacillus sp. R-7764, LMG 18084, LMG:18084, Lactobacter thermoamylovorans, strain DKP
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.