STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B4167_1237Hypothetical protein; COG2358: TRAP-type uncharacterized transport system, periplasmic component. (335 aa)    
Predicted Functional Partners:
B4167_1236
Hypothetical protein; TRAP-type uncharacterized transport system, fused permease component.
 
    0.921
B4167_2726
Hypothetical protein; TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1.
 
    0.854
lpsJ
3-oxoadipate CoA-transferase subunit B.
       0.775
B4167_1239
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A.
       0.775
B4167_3623
Hypothetical protein; Tricarboxylate transport membrane protein TctA.
  
     0.699
B4167_3622
Tricarboxylate transport protein TctC.
  
   
 0.661
B4167_1234
3-hydroxybutyryl-CoA dehydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
       0.517
B4167_1235
3-hydroxybutyryl-CoA dehydrogenase; 3-hydroxyacyl-CoA dehydrogenase /.
       0.510
B4167_1233
Butyryl-CoA dehydrogenase.
       0.470
thlA
3-ketoacyl-CoA thiolase / Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
       0.435
Your Current Organism:
Bacillus thermoamylovorans
NCBI taxonomy Id: 35841
Other names: B. thermoamylovorans, Bacillus sp. LMG 18084, Bacillus sp. R-6546, Bacillus sp. R-7440, Bacillus sp. R-7764, LMG 18084, LMG:18084, Lactobacter thermoamylovorans, strain DKP
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