STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
selDSelenide,water dikinase; Synthesizes selenophosphate from selenide and ATP. (349 aa)    
Predicted Functional Partners:
B4167_0210
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
   
 0.920
B4167_0633
Thioredoxin reductase.
     
 0.908
B4167_2360
Hypothetical protein; Selenophosphate-dependent tRNA 2-selenouridine synthase.
 
   
 0.908
trxB
Thioredoxin reductase.
     
 0.908
B4167_1455
Hypothetical protein; L-seryl-tRNA(Sec) selenium transferase-related protein.
 
   
 0.619
iscS1
Cysteine desulfurase.
    
 0.608
B4167_0717
Cysteine desulfurase.
    
 0.535
B4167_2490
Cysteine desulfurase.
    
 0.463
sspH
Hypothetical protein; Belongs to the SspH family.
       0.433
Your Current Organism:
Bacillus thermoamylovorans
NCBI taxonomy Id: 35841
Other names: B. thermoamylovorans, Bacillus sp. LMG 18084, Bacillus sp. R-6546, Bacillus sp. R-7440, Bacillus sp. R-7764, LMG 18084, LMG:18084, Lactobacter thermoamylovorans, strain DKP
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