STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B4167_3293Hypothetical protein. (138 aa)    
Predicted Functional Partners:
B4167_3292
Hypothetical protein.
 
   0.860
sigA
Hypothetical protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.765
B4167_1260
Hypothetical protein; Transcriptional regulator, AraC family.
 
     0.662
cobB
Hypothetical protein; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class U subfamily.
  
  
 0.647
B4167_1749
Hypothetical protein; Trehalose operon transcriptional repressor.
 
  
 0.640
B4167_1468
Hypothetical protein; Transcriptional regulator, GntR family.
 
  
 0.634
B4167_3104
Hypothetical protein; Transcriptional regulator, AraC family.
 
 
0.630
flhO
Flagellar basal-body rod protein FlgF.
    
   0.602
B4167_2772
Flagellar basal-body rod protein FlgG.
    
   0.602
B4167_3388
Flagellar hook protein FlgE.
    
   0.602
Your Current Organism:
Bacillus thermoamylovorans
NCBI taxonomy Id: 35841
Other names: B. thermoamylovorans, Bacillus sp. LMG 18084, Bacillus sp. R-6546, Bacillus sp. R-7440, Bacillus sp. R-7764, LMG 18084, LMG:18084, Lactobacter thermoamylovorans, strain DKP
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.