STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bofAsigma-K factor processing regulatory protein. (88 aa)    
Predicted Functional Partners:
spoIVFA
Stage IV sporulation protein FA.
  
   
 0.810
BAH41046.1
Hypothetical protein.
       0.755
BAH43272.1
Conserved hypothetical protein.
  
     0.727
BAH41045.1
Conserved hypothetical protein.
       0.712
gerM
Germination protein.
  
     0.688
yaaC
Conserved hypothetical protein.
  
     0.685
gerPE
Probable spore germination protein.
  
     0.667
sspI
Small acid-soluble spore protein; Belongs to the SspI family.
 
     0.659
spoIIP
Stage II sporulation protein P.
  
   
 0.634
gerPE-2
Probable spore germination protein.
  
     0.631
Your Current Organism:
Brevibacillus brevis
NCBI taxonomy Id: 358681
Other names: B. brevis NBRC 100599, Brevibacillus brevis NBRC 100599, Brevibacillus brevis str. NBRC 100599, Brevibacillus brevis strain NBRC 100599
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.