STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mmsAProbable methylmalonate-semialdehyde dehydrogenase. (502 aa)    
Predicted Functional Partners:
acsA
acetyl-CoA synthetase.
  
 0.935
BAH43566.1
acetyl-CoA synthetase.
  
 0.935
gabT
Probable 4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 0.932
ykwC
Putative dehydrogenase.
 
 
 0.926
BAH44091.1
Conserved hypothetical protein.
 
 
 0.925
acdA
Probable acyl-CoA dehydrogenase short-chain specific.
  
 0.915
bkdB
Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex.
  
 0.912
yqjD
Putative propionyl-CoA carboxylase.
   
 0.910
BAH46600.1
Conserved hypothetical protein; Involved in 1,2-propanediol (1,2-PD) degradation by catalyzing the conversion of propanoyl-CoA to propanoyl-phosphate.
    
 0.910
BAH42642.1
acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
   
 0.909
Your Current Organism:
Brevibacillus brevis
NCBI taxonomy Id: 358681
Other names: B. brevis NBRC 100599, Brevibacillus brevis NBRC 100599, Brevibacillus brevis str. NBRC 100599, Brevibacillus brevis strain NBRC 100599
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